9ISV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9ISV_003 | 1/A/124:129 | GNRA | geometric HL_2OIU_003 HL_34789.6 | |
| HL_9ISV_004 | 1/A/146:153 | No text annotation | ||
| HL_9ISV_005 | 1/A/441:448 | No text annotation | ||
| HL_9ISV_006 | 1/A/550:559 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9ISV_001 | GNRA-like with tWH | ||
| HL_9ISV_002 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9ISV_001 | 1/A/29:36, 1/A/50:52 | No text annotation | ||
| IL_9ISV_002 | 1/A/63:74, 1/A/161:167 | No text annotation | ||
| IL_9ISV_004 | 1/A/114:118, 1/A/135:139 | No text annotation | ||
| IL_9ISV_006 | 1/A/175:180, 1/A/541:546 | Quadruple sheared | geometric IL_3FTF_001 IL_29495.2 | |
| IL_9ISV_008 | 1/A/192:195, 1/A/522:528 | No text annotation | ||
| IL_9ISV_009 | 1/A/198:199, 1/A/343:345 | No text annotation | ||
| IL_9ISV_010 | 1/A/201:204, 1/A/337:341 | No text annotation | geometric IL_1U6B_004 IL_20358.1 | |
| IL_9ISV_011 | 1/A/347:353, 1/A/427:432 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_1NBS_007 IL_02666.3 | |
| IL_9ISV_012 | 1/A/437:439, 1/A/450:452 | Isolated non-canonical cWW pair | geometric IL_4M6D_011 IL_01003.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9ISV_003 | Isolated cWH basepair | ||
| IL_9ISV_005 | Isolated cWH basepair | ||
| IL_9ISV_007 | No text annotation | ||
| IL_9ISV_013 | Isolated non-canonical cWW pair | ||
| IL_9ISV_014 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_9ISV_001 | 1/A/76:78, 1/A/111:113, 1/A/140:141, 1/A/158:159 | No text annotation | ||
| J5_9ISV_001 | 1/A/22:25, 1/A/56:57, 1/A/173:174, 1/A/547:549, 1/A/560:561 | No text annotation | ||
| J5_9ISV_002 | 1/A/197:198, 1/A/345:346, 1/A/433:435, 1/A/454:455, 1/A/517:520 | No text annotation |
Problematic loops
No problematic loops
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